PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1046_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 324aa    MW: 36618.3 Da    PI: 10.6611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1046_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07222271147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       RrC1046_p6 222 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 271
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735217276IPR017930Myb domain
SMARTSM007173.7E-6221274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-10222272IPR009057Homeodomain-like
SuperFamilySSF466899.36E-16223304IPR009057Homeodomain-like
CDDcd116605.76E-16223273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVMAKTSQHV TQRKHLDLDL KPGYYSKKHC FKSLRSERRY PIKKRRYFDG YTASQSEAAL  60
QLLLKFGIKS FRVPEIFIDI PETATVGSLK RTVLEAVTTI LEGGLRIGVL VHGKKSGISL  120
DTLSDTLGFC LEPNPPQSTK QLSPEDSDFV RPCNVPHHTL TRCLPSLGKH AKPSNSVDSD  180
LDSKPSASNR GKPVYSRALI PALNVVPPRK PKRSEVAQRR IRRPFSVAEV EVLVQAVERL  240
GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLMAHA  300
YWSQQQGKQQ LLEGPHKLET SLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-592093114106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195351e-125AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482964.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A3P6EPN20.0A0A3P6EPN2_BRAOL; Uncharacterized protein
STRINGBo5g008270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-175TRF-like 2