PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1032_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 22143.1 Da PI: 10.575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.6e-15 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT E+ ++v+a k++G W++I +++g ++t+ q++s+ qk+ RrC1032_p3 48 RERWTDGEHYKFVEALKLYGRA-WRRIKEHVG-TKTAVQIRSHAQKF 92 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-15 | 43 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.615 | 43 | 97 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-15 | 46 | 95 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-10 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-12 | 48 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 48 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-8 | 50 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MNSPRLTANA QGAKAPPRSR VEETSDTQIH FNDYAPKVRK PYIITKERER WTDGEHYKFV 60 EALKLYGRAW RRIKEHVGTK TAVQIRSHAQ KFFSKIAREA TEGSNGSSIV IPPPRPKRRP 120 MHPYPRKLGN EGDQTSRSVS PSERDNRSPT SVLSPVGSEA FGSSDSHSPN QKLVPCFLCI 180 TSGCSCKYFK CTNKAKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353109 | 1e-134 | AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472728.1 | 1e-107 | PREDICTED: protein REVEILLE 1-like | ||||
Swissprot | F4KGY6 | 1e-79 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A0D3B1L5 | 6e-95 | A0A0D3B1L5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g012470.1 | 1e-95 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6356 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 5e-76 | MYB_related family protein |
Publications ? help Back to Top | |||
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