PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10250_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 381aa    MW: 41885.8 Da    PI: 8.9215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10250_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049132155123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ Cg+ F+   +L++H    H
  RrC10250_p1 132 FPCTACGEIFPKTNLLEHHVAIkH 155
                  89*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.12132160IPR007087Zinc finger, C2H2
PROSITE patternPS000280134155IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-10157380No hitNo description
Gene3DG3DSA:3.90.228.103.0E-10158380IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FLGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWAYLK  60
RVFLSTTRIS KSRNQTHPNG PLTTLTSARS SQNSLVTLVQ PDPETRTENG FSDISSSDSP  120
LFLPLRNNNE IFPCTACGEI FPKTNLLEHH VAIKHAVSEL ADGESSTNIV KIIFKSGWPE  180
QQGGSNKIPA IHRILKIHNS PKILARFEEY REFVKAKAAR SSGGNGRWDD ERCVVDGNEL  240
LRFYCSTFMC NLGQNGNSSL CGHQYCSVCG IVGSGFSPKL DGIATFATGW RGHAAVPEEV  300
EEEFGFMNVK RAMLVCRVVA GRVGCDLIAD DDVDKSGGGY DSLVGQGSGS RSGALLRIDD  360
EELLVFNPRA VLPCFVIVYT V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541KRRKKKK
23642RRKKKKL
33743RKKKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433029.10.0PREDICTED: uncharacterized protein LOC108805604
TrEMBLA0A078I7S80.0A0A078I7S8_BRANA; BnaA05g12370D protein (Fragment)
TrEMBLA0A3P5YSP20.0A0A3P5YSP2_BRACM; Uncharacterized protein
STRINGBra018369.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-172C2H2 family protein