PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10171_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 244aa    MW: 27719.9 Da    PI: 9.5676
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10171_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-201372357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++tkeq++ Le+l+++  r+p+a+++++++ +l    +++ ++V++WFqN++a++++
  RrC10171_p1 13 SRWNPTKEQITLLENLYKEgIRTPNADQIQQITGRLrvhgHIEGKNVFYWFQNHKARQRQ 72
                 8*****************99**************************************97 PP
2Wus_type_Homeobox1147.7e-371174265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RW+Pt+eQi++Le+lyk+G+rtPn+++iq+it +L+ +G+ie+kNVfyWFQN+kaR+rqkq
        RrC10171_p1 11 SSSRWNPTKEQITLLENLYKEGIRTPNADQIQQITGRLRVHGHIEGKNVFYWFQNHKARQRQKQ 74
                       579***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.527873IPR001356Homeobox domain
SuperFamilySSF466898.98E-12979IPR009057Homeodomain-like
SMARTSM003897.1E-51077IPR001356Homeobox domain
PfamPF000468.8E-181372IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-71372IPR009057Homeodomain-like
CDDcd000861.41E-51474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENEGKAGTV SSSRWNPTKE QITLLENLYK EGIRTPNADQ IQQITGRLRV HGHIEGKNVF  60
YWFQNHKARQ RQKQKQERIA YFNRFLHKTS RFFRPPLCSN GTPYYLQQVG DHHNQHGHGS  120
VYRHGNNVMN PSGGYDKLTI TDHKKQLSDM TTAAARMAMP SSSLRFDRFT LRDHGYNGED  180
INVNSNGRKT LPLFPLQPLD VASDDCVRNS SCAPGHDSPV TCFGDGGGRE QPFIDFFSGC  240
SSRF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469602.11e-180PREDICTED: WUSCHEL-related homeobox 2
SwissprotQ6X7K11e-128WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A0D3AL061e-156A0A0D3AL06_BRAOL; Uncharacterized protein
STRINGBo2g026810.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-124WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]