PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1008_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 479aa    MW: 53474.7 Da    PI: 5.3042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1008_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14314360455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YIk+Lq
  RrC1008_p2 314 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIKELQ 360
                 799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-4746234IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.31E-18309369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-16313364No hitNo description
Gene3DG3DSA:4.10.280.102.4E-18314369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-12314360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-18316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MNGLGWDEEE TSIANAVLGN SASDFLRTIS SSNQNLFLFT ETDDTLNKKL SSLVEWPNSE  60
NFSWNYSILW QQTVSRSGHQ VLGWGDGCCR EPNHSEESKL VSGFEEEEEM RRWQEMRRRV  120
LHKLQRVFGE SDEEDNYALS LENVTATETF FLASMYFFFN HGEGGPGRCF SEGRHVWWVS  180
DEVGYDYCFR SFMAKRAGIR TVVMVPTDAG VVELGSVWSL PENVELVRSV QGLFMRRAEP  240
SRGGGGIHKL FGQELNSLDH NNKGYTSQGS DVKVQENANV VVAGGGGGGA CVVEEKRPKK  300
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLE DAISYIKELQ  360
EKVKSIEAEG VRRTVDSTAA VEIQAGEEEV VVRVISPLES HPASRIIQAM RNSEVSVMES  420
KLSSAEETVF HTFVVKSNNG SDPLTKEKLI AAAGYPQSSL MQQQQPLVPS HSSQVSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27308372266Transcription factor MYC2
5gnj_B2e-27308372266Transcription factor MYC2
5gnj_E2e-27308372266Transcription factor MYC2
5gnj_F2e-27308372266Transcription factor MYC2
5gnj_G2e-27308372266Transcription factor MYC2
5gnj_I2e-27308372266Transcription factor MYC2
5gnj_M2e-27308372266Transcription factor MYC2
5gnj_N2e-27308372266Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295303KRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485202.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A3P6CRN00.0A0A3P6CRN0_BRACM; Uncharacterized protein
STRINGBo4g197150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-125ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]