PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48859.m000017
Common NameRCOM_2059950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 424aa    MW: 48375.6 Da    PI: 4.3358
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48859.m000017genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.52.8e-15161512128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyat.gkrknr..atksgyWk.. 84 
                    ++G+rF+Pt++elv +yL+   +g+  ++e+   +k +d y   ePw++ +     k  ++++++yfF+  +k ++  g++ +r    ++g+W+  
  48859.m000017  16 AVGLRFRPTENELVAYYLHGMNNGRFSSVENQlpVKYCDFYGKeEPWEIWQkfggdK-LSDHEDLYFFTALKKVTPGgGHNISRriGSTAGTWHge 110
                    68******************999998666554358889*996549****75244422.2356688******9999963455555233558****64 PP

            NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++g++ ++++ +g  +   k + +  + ++  +   W m ey+l
  48859.m000017 111 TSGNSSKLHH-NGV-TAYMKRFNYR-NPSRLDQDRCWNMLEYSL 151
                    4455555555.555.5555567776.5555557888******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-175165IPR003441NAC domain
PROSITE profilePS5100520.58715166IPR003441NAC domain
PfamPF023656.4E-1317151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMQETQNTSS PWANMAVGLR FRPTENELVA YYLHGMNNGR FSSVENQLPV KYCDFYGKEE  60
PWEIWQKFGG DKLSDHEDLY FFTALKKVTP GGGHNISRRI GSTAGTWHGE TSGNSSKLHH  120
NGVTAYMKRF NYRNPSRLDQ DRCWNMLEYS LEGGESRYVL CQLKRSRKQS RKRKSQTAAD  180
DSVEVLEPVK RLRIEQELPE NSLENPKAVD IVPAMHEQDV MALPYNSDEG QVNGSEPDMH  240
SRAEEELIKL LEENLQEYQK AAVDIVHSAE EQDAMAMPVP LPDDDFYLDL FNFDDYFPRD  300
DANVSVDASV LDKRPRVEEE LPTNIEKNQE AADAVVEQEL QNNFQENKQA ADCMEPAMEE  360
PELKSQENQG VAVHTVPAPD ILALAASMPW PSGPEDSIIV NDRILDHDMD PSFYYDDLFG  420
GYMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap48859.m000017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9TA380.0B9TA38_RICCO; Uncharacterized protein
STRINGXP_002535107.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.26e-10TCV-interacting protein