PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 43951.m000016 | ||||||||
Common Name | RCOM_2020090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 195aa MW: 21593.2 Da PI: 9.3615 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.6e-30 | 89 | 148 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ 43951.m000016 89 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSIEDQTILVATYEGEHNHP 148 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-29 | 80 | 150 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.693 | 84 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-25 | 86 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-33 | 89 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 90 | 148 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MLTVMCENYN ALKSQLMDYV SKNRDKELSP SRKRKSESSN NDNTIAMNGN SESSSTDEES 60 CKKPREEIVK AKISRTYVKT EAPDTSLIVK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPS 120 CPVKKKVQRS IEDQTILVAT YEGEHNHPHP SQMEATSGAS RSLTLGSVPC SASLGSSGPT 180 ITLDLTKSKS SNDAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 88 | 150 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 35 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 43951.m000016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002539501.3 | 1e-143 | probable WRKY transcription factor 40, partial | ||||
Swissprot | Q9SAH7 | 3e-75 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | B9TMN2 | 1e-142 | B9TMN2_RICCO; WRKY transcription factor, putative (Fragment) | ||||
STRING | XP_002539501.1 | 1e-143 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-77 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | 43951.m000016 |