PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30225.m001689 | ||||||||
Common Name | RCOM_1761730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23526.2 Da PI: 7.214 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.9e-09 | 14 | 48 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 +g+W++eEd++l v +G ++W++ +r g +Rt 30225.m001689 14 KGAWSQEEDDKLRSHVLNYGHRNWRKLPRFAG-RRT 48 79******************************.998 PP | |||||||
2 | Myb_DNA-binding | 28.2 | 4.3e-09 | 52 | 73 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia +++ gRt++++k++w++ 30225.m001689 52 WSKIATKLP-GRTDNEIKNHWHT 73 *********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.49 | 9 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 12 | 48 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 13 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.19E-13 | 14 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 14 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-10 | 16 | 73 | No hit | No description |
Pfam | PF00249 | 1.8E-6 | 52 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-12 | 52 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVRTVCVDKN GLKKGAWSQE EDDKLRSHVL NYGHRNWRKL PRFAGRRTFL IWSKIATKLP 60 GRTDNEIKNH WHTQLKKREK HSESTSELME NQPNKTPQSV ITVPSENLQP ERAVSYNAPF 120 RPIILESSPL PHEGSQNSLF WGGINRVSED CTLTSMDIFE DSGQDFWTQP FVADKDGDYK 180 GDGYYSFYHS SNDDNMDLIT QKY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30225.m001689 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571045.1 | 1e-138 | transcription factor MYB15 | ||||
TrEMBL | B9RHM2 | 1e-152 | B9RHM2_RICCO; DNA binding protein, putative | ||||
STRING | XP_002513241.1 | 1e-152 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-23 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | 30225.m001689 |