PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30199.m000879 | ||||||||
Common Name | LOC8280535, RCOM_1708810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28708.1 Da PI: 9.8494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5.1e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n++ r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 30199.m000879 11 ISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSP 50 9**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.92E-25 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.465 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.84E-23 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 4.7E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-19 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTRKKVKLAY ISNDTARKAT FKKRKKGLMK KVSELSTLCG VDACAIIYSP YDAQPEVWPS 60 AIEVQRVLSQ FKNMPEMEQS KKMVNQESFL RQRIGKANEQ LKKQRKDNRE KEVTQVMFQS 120 LTGKTLNNLN MMDLNDLGWI INQYLKDIYK KVETVSKEIN RQVTAAPPPP SPPPQQLPPP 180 SGPAQAIAEV APSQQAAERQ AFEVNMEAMQ RQQWIMDLIN PHENMGFIGD EMMLPFGDHN 240 HNSLWSNAFF P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYISNDTARKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30199.m000879 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520092.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 6e-68 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | B9S273 | 0.0 | B9S273_RICCO; Mads box protein, putative | ||||
STRING | XP_002520092.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-54 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | 30199.m000879 |
Entrez Gene | 8280535 |
Publications ? help Back to Top | |||
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