PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30190.m011331

Common Name

LOC8258447, RCOM_1674060

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 357aa MW: 39296.6 Da PI: 8.5527

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30190.m011331	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ 30190.m011331 53 PQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 113 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.9E-34	55	111	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	56	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLGNCEKMVV ISPTTNEWPQ NQIDEKSLMV SSTSKLMEKR GQDPSQPQQQ QQPQQALKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RVKRPSSSGG 120 EGTINQVSSV NPNNPSSHQT PIDHITSTSN HINHLFYGLP TNPSEMNLPF GRFNSRVSSN 180 MDTGYDLPPQ LNALALGFSS GILGNNEANN GFNPTKHIQD SVTSTSLLTN YSSIFGCSSS 240 STATTSPSIA TLLASSLHQQ NKFSVKDSNR APNHFQNLTP FEDLQMSCNS TESGIAMKEV 300 KTEQGQSRLH WNMPCQNQIE QMGFSSSEPS LYWNPNTSSV GTWHDPANIG SSVTSLI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLGNCEKMVV ISPTTNEWPQ NQIDEKSLMV SSTSKLMEKR GQDPSQPQQQ QQPQQALKCP  60
RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RVKRPSSSGG  120
EGTINQVSSV NPNNPSSHQT PIDHITSTSN HINHLFYGLP TNPSEMNLPF GRFNSRVSSN  180
MDTGYDLPPQ LNALALGFSS GILGNNEANN GFNPTKHIQD SVTSTSLLTN YSSIFGCSSS  240
STATTSPSIA TLLASSLHQQ NKFSVKDSNR APNHFQNLTP FEDLQMSCNS TESGIAMKEV  300
KTEQGQSRLH WNMPCQNQIE QMGFSSSEPS LYWNPNTSSV GTWHDPANIG SSVTSLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30190.m011331

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	1e-95	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002509452.1	0.0	dof zinc finger protein DOF1.4 isoform X1
TrEMBL	B9RBB8	0.0	B9RBB8_RICCO; Zinc finger protein, putative
STRING	XP_002509452.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	30190.m011331
Entrez Gene	8258447