PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30190.m011278

Common Name

RCOM_1689120

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 185aa MW: 21055.8 Da PI: 9.1895

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30190.m011278	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s + rsYYrCt+++C+vkk+++r ++d ++v++tYeg Hnh+ 30190.m011278 106 LDDGFRWRKYGQKAVKNSIHLRSYYRCTHHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 164 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-31	93	164	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-27	99	165	IPR003657	WRKY domain
PROSITE profile	PS50811	26.854	101	166	IPR003657	WRKY domain
SMART	SM00774	5.6E-36	106	165	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	107	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDNGEIPPPL MMTADDILNL NNQSLMPTSL FPSMDQHAIE SQQFASDHID WVSLLSGSFQ 60 FGDQNLTPPT ARDSENAVTN KKKGGRAKKT TPQRISFHTR SADDILDDGF RWRKYGQKAV 120 KNSIHLRSYY RCTHHTCNVK KQIQRLSKDS SIVVTTYEGI HNHPCEKVME SLGPLLRQLQ 180 FLSRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-23	94	163	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30190.m011278

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002509864.2	1e-139	probable WRKY transcription factor 43
Swissprot	Q8VWQ4	8e-56	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	B9RCI0	1e-138	B9RCI0_RICCO; WRKY transcription factor, putative
STRING	XP_002509864.1	1e-138	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	3e-58	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	30190.m011278