PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010868
Common NameRCOM_1674130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 418aa    MW: 47940.6 Da    PI: 7.8145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010868genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-17168258391
                    EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    k l++sdv+++gr+vlpk+ aee+    +   +e++ + ++d  s ++W++k++y  ++ks++yvl+ ++ +Fvk+ng++ gD+++++  ++++++
  30190.m010868 168 KDLKTSDVGSLGRIVLPKREAEENlpilS--DKEGILVAIRDvCSTKEWSLKYKYwsNNKSRMYVLE-NTGDFVKQNGMRIGDSLTLY--EDESKK 258
                    7799**********************643..447899*****7788*******99888888889999.********************..444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-23163262IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.686166266IPR003340B3 DNA binding domain
SMARTSM010196.3E-17166266IPR003340B3 DNA binding domain
SuperFamilySSF1019365.36E-19167262IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-14168259IPR003340B3 DNA binding domain
CDDcd100174.08E-18170261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDSFQNSQFS SIRRPLCYSS TSSNSSTQTY HCPAEDNMPT TPFQSPHFQQ EYRPEQAGQN  60
STSAFSMCPY WLSQNGTEIQ TWLLQQNGLS IDQGKKVLDA YKTKIARNKR KLARQRSLSR  120
NSSSSANSIQ VDTRRLAFNM QDSQSTSKRD LYKFCTPDNK KLRVLLRKDL KTSDVGSLGR  180
IVLPKREAEE NLPILSDKEG ILVAIRDVCS TKEWSLKYKY WSNNKSRMYV LENTGDFVKQ  240
NGMRIGDSLT LYEDESKKLL CTHSTEETGE VFPHARRQYF SVKKVEALEA EPSCKQHATN  300
QNYIYIPHTY QARDEEEASL ALLIEQLKHK EQQEEVNSLV TLSMDIAPYR HKEEEKNYGP  360
FNNLTSISIY PQSTAAAMAI QPSSSAHSTM RVVDDHYIDD FYTALDVLPD VNRYNFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A8e-481562593106B3 domain-containing transcription factor LEC2
6j9c_D8e-481562593106B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1463860.0KC146386.1 Ricinus communis cultivar IT196881 clone pENTR-RcLEC2 leafy cotyledon 2 (LEC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310615.10.0B3 domain-containing transcription factor LEC2
TrEMBLB9RBC50.0B9RBC5_RICCO; Uncharacterized protein
STRINGXP_002509459.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.19e-53B3 family protein