PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010814
Common NameLOC8287752, RCOM_1691430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 338aa    MW: 38011.7 Da    PI: 5.3819
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010814genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.7e-29129189259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++e+tY+g H+++
  30190.m010814 129 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEVTYRGIHTCS 189
                    8***************************98899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-28121189IPR003657WRKY domain
PROSITE profilePS5081121.964123186IPR003657WRKY domain
SuperFamilySSF1182905.89E-26127190IPR003657WRKY domain
SMARTSM007743.6E-40128190IPR003657WRKY domain
PfamPF031061.2E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESGLSWEQH TLVRELIQGM ELAKQLRVHL NSASSVETRD SLIQRILSSY EKSLLILNWS  60
GSLIQQQNAG GVSVAPATVP ESPISMNGSP GSDDFDGAHN DASKKRKTMP RWTDQVRVSS  120
ENGLEGPHDD GYSWRKYGQK DILGAKYPRS YYRCTYRNTQ NCWATKQVQR SDEDPTIFEV  180
TYRGIHTCSH GQQSVPTPAS PEKQEQKQNN SNNRNQQQPQ ETLFNFQKNL RVNTEDLDNK  240
NSAFPFSFPP TYESMGAASS SPSFMSPATP EPNYYSISPF QMNNFSGLQN LHHSESDFTE  300
IISTNTSATN SPIVEPNFSL QPFELDPNFP FDTPGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-19129188968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509941.10.0probable WRKY transcription factor 41
TrEMBLB9RCQ70.0B9RCQ7_RICCO; Uncharacterized protein
STRINGXP_002509941.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-77WRKY family protein