PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m009129
Common NameRCOM_1621070
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 279aa    MW: 31648.9 Da    PI: 5.4941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m009129genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.53e-411192443128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     G+rF+P+d el+ +yL++k+ g + +l ++i+evd+yk++P++Lp  ++k+    e yfF+++ +k+++++ ++r++ +gyWkat k++ v++ +
  30174.m009129 119 CGYRFSPNDYELIIYYLAQKILGMPRPL-DIIQEVDVYKCDPEQLPiDEFKHALPgEAYFFTRKVRKHSNKSSSRRTIGTGYWKATDKETIVTR-R 212
                    69***********************999.99***************655555433699****************************99777776.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++ vg kkt+vfy+g+apkg++t+W+m+eyr+
  30174.m009129 213 KKCVGYKKTMVFYRGKAPKGKRTHWIMDEYRV 244
                    99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-42113248IPR003441NAC domain
PROSITE profilePS5100537.151117265IPR003441NAC domain
PfamPF023656.9E-21120244IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSLSSLVFL VLTNLPSPEV DSDTAEVEEV LGNLAPPEAD KVEEEEEINE LQHDLASSSS  60
YNLAGDLIVD QLTKMEDFQA PQVQYGAEGN EDIGENLIAL PRQSAGRCVD MVGNLNSVCG  120
YRFSPNDYEL IIYYLAQKIL GMPRPLDIIQ EVDVYKCDPE QLPIDEFKHA LPGEAYFFTR  180
KVRKHSNKSS SRRTIGTGYW KATDKETIVT RRKKCVGYKK TMVFYRGKAP KGKRTHWIMD  240
EYRVNASLFP NIQRNERLKS NVITIGELCG MQNQKKDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-331102448140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m009129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015851.11e-150NAC domain-containing protein 41 isoform X1
TrEMBLB9REG20.0B9REG2_RICCO; Transcription factor, putative
STRINGXP_002512101.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.18e-36NAC domain containing protein 45