PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008809
Common NameLOC8265837, RCOM_1609660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 235aa    MW: 26000 Da    PI: 7.5045
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008809genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18160194135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  30174.m008809 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 194
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-815235IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-16154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385158190IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-14158217No hitNo description
Gene3DG3DSA:3.30.50.107.2E-14158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.30E-14159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.0E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDIYGIPTPD YFRIDDLLDL SNDDLFSSAS TCTSSSIAAD IHQPLNPSIH NSAPFNPALS  60
TDFTDHLSVP SDDVAELEWL SQFVDDSFIE FPPNLLTGTI NVRSDTSFSG KAARRKRSKA  120
ATTTATTAWT SSPEIGQSKS KKETNNRSLS PTTEGGIRRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRYK SGRLVPEYRP AASPTFVLTQ HSNSHRKVLE LRRQKEMLRQ QLEEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008809
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511642.11e-175GATA transcription factor 4
SwissprotO497411e-76GATA2_ARATH; GATA transcription factor 2
TrEMBLB9RD531e-174B9RD53_RICCO; GATA transcription factor
STRINGXP_002511642.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.17e-68GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]