PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008663
Common NameLOC8286686, RCOM_1616660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 347aa    MW: 37773.6 Da    PI: 6.3084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008663genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31165223259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+geHnh+
  30174.m008663 165 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTGEHNHP 223
                    79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081135.301159225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-31159225IPR003657WRKY domain
SuperFamilySSF1182907.98E-27162225IPR003657WRKY domain
SMARTSM007742.8E-38164224IPR003657WRKY domain
PfamPF031063.8E-26166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSLRSIAMDD DWDLQAVVRG CTTASPSVAV TTTTNIGGYA SSFINTGDFY TQSCFGSESA  60
SGSLFSTPDP FETRNNNVTG ELHELYKPFF PKSHQTTTCL YTPQGAPISP VVISKEQTQL  120
KLQHQQPKQS HTGSVTSSAN SQTRSKRRKN QLKKICQVPA EALSSDVWAW RKYGQKPIKG  180
SPYPRGYYRC SSSKGCLARK QVERNRSDPG MFIVTYTGEH NHPAPAHRNS LAGITRQKTT  240
APQTVAASDS NQPSPLKPTC SSPATSLDDD LLPQSTNTES RDEKDTMEDD DEDEFGGFSD  300
MTVSDDFFAG LEELASPATG DRFSDHFTVN FGLPWLANNA ATAAGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-21149225279Disease resistance protein RRS1
5w3x_D3e-21149225279Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511920.10.0WRKY transcription factor 22
TrEMBLB9RDY10.0B9RDY1_RICCO; WRKY transcription factor, putative
STRINGXP_002511920.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-77WRKY family protein