PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008651
Common NameLOC8286674, RCOM_1616340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 333aa    MW: 37800.9 Da    PI: 5.2721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008651genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29125184258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    dDgynWrKYGqK++ g++fprsYYrCt++   gC ++k+v+rs++dp+++e+ Y+g+H++
  30174.m008651 125 DDGYNWRKYGQKDILGANFPRSYYRCTHRhsqGCLATKQVQRSDQDPTIFEVNYSGKHKC 184
                    8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28117184IPR003657WRKY domain
SuperFamilySSF1182906.93E-25123184IPR003657WRKY domain
SMARTSM007747.2E-39124186IPR003657WRKY domain
PROSITE profilePS5081123.02125182IPR003657WRKY domain
PfamPF031061.4E-26125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEREQKILVN ELTQGKELAE QLRNHLNNIS SFEMRQGLVE QILSSYEKAL SMLNWDASAI  60
ETKPIITTLE SPHSNYAKRS PSPRSEVSDQ DCKDQCHGGV YKKRKTQPRW TLRVCSESGM  120
EGPPDDGYNW RKYGQKDILG ANFPRSYYRC THRHSQGCLA TKQVQRSDQD PTIFEVNYSG  180
KHKCLHSSRL ATSSPSPIND KSEQNKDNFQ LQQLEDKPKP LNELSFNYKD GLKSEDLDIF  240
PSFSFPDASY MGNENDIYRE SLIENNLLGS LSSPAFISPA TSESNYFSVS PCHYSVRTPE  300
SDSLPTSVVN SPIGIWDISI DNVEFDASFP FEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-171261821874Disease resistance protein RRS1
5w3x_D1e-171261821874Disease resistance protein RRS1
6ir8_A1e-17125184968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511908.10.0probable WRKY transcription factor 53
TrEMBLB9RDW90.0B9RDW9_RICCO; WRKY transcription factor, putative
STRINGXP_002511908.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-46WRKY family protein