PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013948
Common NameLOC8260895, RCOM_1592640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 347aa    MW: 38078.7 Da    PI: 7.0691
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013948genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1018e-32142195255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  30170.m013948 142 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 195
                    9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.74E-15139196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28140196IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23142195IPR006447Myb domain, plants
PfamPF002492.3E-7143194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MFSSSNLMMR TASSLPDLSL QISPPLASDC EANEMGTNYN GGITWKALYC DRSSTTDSGS  60
SGSDLSHENG TLNQERSYNN NLGPSEPTLS LGFEMADMTT PPALQLPRNL NHHHHHQPQI  120
YGREFKRNGR MISGVKRSIR APRMRWTTTL HAHFVHAVQL LGGHERATPK SVLELMNVKD  180
LTLAHVKSHL QMYRTVKSTD KGTGQGQTDM GLKQRAGIVD VDAGVSAGKA DANPCCSLNP  240
PPPPTPTTPL PSVQKTQIRG SWSSSMETRD INISNSEALI YSHFSAHDTK ENGPMADLHM  300
SDRVKESLDS SSLSSTDMLV NLEFTLGRPS WQMDYAESSN ELTLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-17143197357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17143197357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17143197357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17143197357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-17143197458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510296.10.0probable transcription factor KAN4
TrEMBLB9R7K30.0B9R7K3_RICCO; Uncharacterized protein
STRINGXP_002510296.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.18e-75G2-like family protein