PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013945
Common NameRCOM_1592610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 337aa    MW: 38657.9 Da    PI: 7.0214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013945genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.71.2e-19351141398
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +rl +p +f+++   k   +k +tl+ +sgr+Wev l    +++++++  GW+ Fv ++ L+e+D ++Fk++g+s+f   v +f+
  30170.m013945  35 DRRLAIPEQFTKNLRRK--LPKIITLRGPSGRTWEVGL--AANDDTVFFNHGWEAFVIDHSLQEKDLLIFKYNGDSCF--DVLIFD 114
                    568********666544..8899***************..**************************************..888887 PP
2B345.71.1e-14234317186
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    f  v++p +v+++  +++p   + +h  +++ ++  +++    + ++W  k++y+k++ +  l++GWk+F+ an+L+e D++vF+ +g
  30170.m013945 234 FMVVMKPTHVNRRFYMSIPSGWMVKHlsSLE-KQ--DVI-LCVKEKQWVTKFCYQKSKHSGGLSGGWKSFALANDLQEFDVCVFEPSG 317
                    77899*********************74333.33..454.44578*********99999999***********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2322114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.07223116IPR003340B3 DNA binding domain
CDDcd100174.10E-2225114No hitNo description
Gene3DG3DSA:2.40.330.101.7E-2325114IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-1826116IPR003340B3 DNA binding domain
PfamPF023622.2E-1636114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-17233330IPR015300DNA-binding pseudobarrel domain
CDDcd100173.32E-20234331No hitNo description
PROSITE profilePS5086310.405234333IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-16234319IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-13234317IPR003340B3 DNA binding domain
SMARTSM010192.9E-12234333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGEESCRDCR SWEEEIYWTH FQCLHFSQIL HPGFDRRLAI PEQFTKNLRR KLPKIITLRG  60
PSGRTWEVGL AANDDTVFFN HGWEAFVIDH SLQEKDLLIF KYNGDSCFDV LIFDGQSLCE  120
KAASYFVRKC GHREQESGCQ TKRRIGEISV EATLPSPENP VEGPTPEKSA NTDIYTTPLR  180
QPITSRAYTK KTRREVDPDV IHNVPYLSSR RLITEEEKQN ALQLAQAALT SEGFMVVMKP  240
THVNRRFYMS IPSGWMVKHL SSLEKQDVIL CVKEKQWVTK FCYQKSKHSG GLSGGWKSFA  300
LANDLQEFDV CVFEPSGLQN NAVVLNVNIF PVYQEDL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574761.10.0B3 domain-containing protein REM16
RefseqXP_015574767.10.0B3 domain-containing protein REM16
TrEMBLB9R7K00.0B9R7K0_RICCO; DNA binding protein, putative
STRINGXP_002510293.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-88B3 family protein