PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013944
Common NameLOC8260891, RCOM_1592600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 360aa    MW: 41403.3 Da    PI: 9.2974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013944genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.7e-17341141298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++rl +p kf+++   k     t+tl+++ g  Wev l  + + ++ ++  GW+eFv+ + L+e+D++vFk++g+s+f   v +f+
  30170.m013944  34 FNQRLAIPEKFTRNLRRK--LRDTVTLKSPCGTAWEVCL--TAHENTLFFDHGWREFVEYHSLEENDILVFKYNGESSF--DVLMFD 114
                    5789********777654..5569***************..*********************************99999..666665 PP
2B354.32.5e-17248330185
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                    f+ v++p +v+k+  +++p + ++eh   ++    + ++   + ++W+v+l yrk+++r  l+ GWk+Fv +n+++e D++vF+  
  30170.m013944 248 FIAVMKPTHVSKKFFMSIPSSWVSEHiTCQE---NQYVILRIKEKTWQVRLYYRKRPNRGGLACGWKSFVLDNNIQEFDVCVFEPG 330
                    7889**********************63332...347888899********99*******************************43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-2020114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.07223116IPR003340B3 DNA binding domain
CDDcd100175.20E-1925114No hitNo description
Gene3DG3DSA:2.40.330.104.0E-2125114IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1326116IPR003340B3 DNA binding domain
PfamPF023625.4E-1535112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-20247345IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.069248347IPR003340B3 DNA binding domain
CDDcd100178.30E-23248345No hitNo description
PfamPF023629.0E-16248337IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-18248333IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.7E-11248347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKEGACADCR SWEEKLYWMH FQYIYFCQFL LAGFNQRLAI PEKFTRNLRR KLRDTVTLKS  60
PCGTAWEVCL TAHENTLFFD HGWREFVEYH SLEENDILVF KYNGESSFDV LMFDGQSMCE  120
KAGSYFLAKR THKGYNSTGY QSKRKTGESS AEVLSALPVD GNGGSPLKKP RHHNFHTTLG  180
RPLISRAVNN KARREIKFKT PIDAPKTARK KEPYTWAEDA EAKADTAHDK AKLKVCQSAQ  240
AAVTSEGFIA VMKPTHVSKK FFMSIPSSWV SEHITCQENQ YVILRIKEKT WQVRLYYRKR  300
PNRGGLACGW KSFVLDNNIQ EFDVCVFEPG NPLDNTMVLD VNIFRVVQDM NPHTPASLTR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510292.10.0B3 domain-containing protein REM16
RefseqXP_015574771.10.0B3 domain-containing protein REM16
TrEMBLB9R7J90.0B9R7J9_RICCO; DNA binding protein, putative
STRINGXP_002510292.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-70B3 family protein