PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m013927 | ||||||||
Common Name | LOC8260872, RCOM_1591910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 27131.2 Da PI: 8.5044 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + 30170.m013927 38 KGPWSAEEDRILTRLVERHGPRNWSSISRYIK-GRSGKSCRLRWCNQ 83 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 92 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 30170.m013927 92 PFSPAEDQTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 134 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.28 | 33 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-31 | 35 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-17 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-18 | 38 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 39 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-15 | 40 | 82 | No hit | No description |
SMART | SM00717 | 4.7E-15 | 89 | 137 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.267 | 90 | 139 | IPR017930 | Myb domain |
CDD | cd00167 | 1.55E-11 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 92 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-14 | 92 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEAAVNMCST SSSSSESSSS ESSFNNTPRS SNKPERIKGP WSAEEDRILT RLVERHGPRN 60 WSSISRYIKG RSGKSCRLRW CNQLSPNVEH RPFSPAEDQT ILAAHARYGN RWATIARLLP 120 GRTDNAVKNH WNSTLKRKAK EQQHQMMIES NFDHNEGIIV AVESSAGSIM PRMAVQEEDV 180 LTALTLAPPG IGGGSGGDSG TNGGGMVADN RAESLPSGFW DVMRNVIARE VREYMSSSLN 240 ETSPGFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-41 | 34 | 139 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-41 | 34 | 139 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m013927 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510273.1 | 0.0 | transcription factor MYB77 | ||||
TrEMBL | B9R7I0 | 0.0 | B9R7I0_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002510273.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-58 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m013927 |
Entrez Gene | 8260872 |