PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013749
Common NameRCOM_1587600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 327aa    MW: 36131.2 Da    PI: 4.708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013749genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-102532931055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  30170.m013749 253 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 293
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-14243309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11252297No hitNo description
PfamPF000109.9E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEQTSGVFPD GEWDFSRMFC TEDQLDLTSE FLGQCSFPVG NHDGGLQLTD LSAFCPNSEA  60
NVNLTEENSS SSNCSSHENC FCSDSNHIPA TNDISMSMDF CIMGDKISGS SVSMFPEIGM  120
TQTVCIDEIN APPGANPVPD KELQLKRKFD VRESEVNPSE SCTKKKSRAR RDVQKSRKDE  180
KPKKNQKFTP NNNEAEDRNA GPEGQSSSSC CSGEDNASQD SNGDSKVSEA LNSKGKARAG  240
RGSATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYAPI AYNGMDIGLN QKICMLL
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572935.10.0transcription factor bHLH85
TrEMBLB9R7130.0B9R713_RICCO; Transcription factor, putative
STRINGXP_002510106.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-43bHLH family protein