PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013698
Common NameLOC8288550, RCOM_1588820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 295aa    MW: 32432.5 Da    PI: 8.2132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013698genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.5e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
    30170.m013698 16 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding55.41.4e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde + +a+ ++G++ W+tIar ++ gRt++ +k++w++ 
    30170.m013698  70 PFTPEEDETIMRAHSRFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0471166IPR017930Myb domain
SuperFamilySSF466891.24E-3213109IPR009057Homeodomain-like
SMARTSM007171.1E-161564IPR001005SANT/Myb domain
PfamPF002491.7E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-261768IPR009057Homeodomain-like
CDDcd001675.09E-161860No hitNo description
SMARTSM007173.6E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129421.26468117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2369116IPR009057Homeodomain-like
CDDcd001671.58E-1170113No hitNo description
PfamPF002494.8E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MACSNSTARK DVDRIKGPWS PEEDEALQRL VQNYGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPEVEHRP FTPEEDETIM RAHSRFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCYDL  120
NDDVAHNPQP LKRSASLGAG GLPGSPSGSD LSDSSLPDMA SSPVYRPLAR TGSLVVPPAS  180
LPLDATSSTT TTTTADPPTS LTLSLPGSDE VSNQISGPEF TQLAVPVQQV PAVQQQNGIG  240
FEKQFFTPEF LTVMQEMIRK EVRNYMSGVE QNGLCMQTEA IRNAVVKRIG ISRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-42151173105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-411511757159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-411511757159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-42151173105C-Myb DNA-Binding Domain
1msf_C3e-42151173105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013698
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510155.10.0transcription factor MYB44
SwissprotO231602e-91MYB73_ARATH; Transcription factor MYB73
TrEMBLB9R7620.0B9R762_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002510155.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-69myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]