PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006581
Common NameLOC8277082, RCOM_1581940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 459aa    MW: 50157 Da    PI: 6.0673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006581genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30233291259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++ Y+g+H+h+
  30169.m006581 233 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNIDPNMFIVSYTGDHTHP 291
                    8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29221293IPR003657WRKY domain
PROSITE profilePS5081132.891227293IPR003657WRKY domain
SuperFamilySSF1182909.02E-26227293IPR003657WRKY domain
SMARTSM007748.0E-36232292IPR003657WRKY domain
PfamPF031062.2E-25233291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAEDWDLYAI VRSCTSAAVN ASNSNTNITT DIPVENGNSG NYLDCLASLT FDDEDDPFSF  60
PDLVQPRNNG WQELQDSYKP FLPTTSGQGN IPLSSIYNFG EFNGQNQPQL AQHQYHHHLQ  120
PQQQQPAAVL AAVPPTPPPA PPPSPPSNTH FSLRFIDLQQ QLQHAQPPQL QQLHHHHPHP  180
NPHQQQSSQR AETCTLPVHP LRTTTQCPVS RSRKKKSHIK RQVTQVTAEN LCNDVWAWRK  240
YGQKPIKGSP YPRNYYRCSS SKGCAARKQV ERSNIDPNMF IVSYTGDHTH PRPTHRNSLA  300
GSTRNKFPSL QKTSATTNKE SDEPEKAPCS SPLSVTSFSP TTPLSGSMDH EATAANENNK  360
PEAGDVDIGA DMEGHRMEND EDDEYDGDDI LIPNMTLNEE LIKDLQELGS AGIEVAFSGL  420
SSNTSRAAGV GHTPDFGDKF SSWAVGSSAA AAGAAGGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-192342941880Disease resistance protein RRS1
5w3x_D3e-192342941880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217KKKSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513635.10.0probable WRKY transcription factor 27
TrEMBLB9RIR60.0B9RIR6_RICCO; Uncharacterized protein
STRINGXP_002513635.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-52WRKY DNA-binding protein 27