PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006533
Common NameLOC8274387, RCOM_1580550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 370aa    MW: 41167.7 Da    PI: 5.638
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006533genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29134195159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  30169.m006533 134 LDDGFSWRKYGQKDILGARYPRGYYRCTHRivqGCLATKQVQRSDEDPTIFEVTYRGRHTCT 195
                    59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.009129192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-29131196IPR003657WRKY domain
SuperFamilySSF1182907.45E-26133195IPR003657WRKY domain
SMARTSM007741.5E-40134196IPR003657WRKY domain
PfamPF031061.7E-26135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MESMGDCEQK NLVNELRMGR ELTRQLQIHL NIPSYSRETR ELLVQKILSS YEKALSMLNL  60
SRLITKEPLP TGVATNGMPE SPPLSLSGSP RSDQDSDRDF KDQDPKDVSR KRTSTARWTK  120
QVRVNPGMGL EGPLDDGFSW RKYGQKDILG ARYPRGYYRC THRIVQGCLA TKQVQRSDED  180
PTIFEVTYRG RHTCTQMLHY NPQLPENINQ ETNSSCIEPQ QPENQHPSQD PLLNLRSALK  240
VITEGLDDLE QSLPPFHFPS TSNVIAQNQV FSPSMLDNNL MGNFSSSFIS PSTSTAKPNY  300
FSASSSGLHQ SFGGGNQSLQ TSDSDPSDII AAAAGTTSAT DSPTTGVDFP FGNVEFDPKY  360
FSFDNHGFIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20134194868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513588.10.0probable WRKY transcription factor 53 isoform X2
TrEMBLB9RIL90.0B9RIL9_RICCO; WRKY transcription factor, putative
STRINGXP_002513588.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-50WRKY family protein