PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006450
Common NameLOC8274455, RCOM_1578200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 675aa    MW: 74183 Da    PI: 6.013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006450genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06278298526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+++++ G C++Gd C ++Hg
  30169.m006450 278 PCPDHRK-GACRRGDFCEYSHG 298
                    7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127965.9E-1054127IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-1557138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.73358165IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0115888IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.7E-1758146IPR020683Ankyrin repeat-containing domain
CDDcd002043.90E-1458136No hitNo description
PROSITE profilePS500888.5235879IPR002110Ankyrin repeat
SMARTSM002485.8E-493125IPR002110Ankyrin repeat
PROSITE profilePS5008811.0693128IPR002110Ankyrin repeat
PROSITE profilePS5010312.915273300IPR000571Zinc finger, CCCH-type
SMARTSM003560.001273299IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4278298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4305336IPR000571Zinc finger, CCCH-type
SMARTSM0035654308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNNSVDTVGT EHSFSVLLEY AADNDVEGFK QSVCDESEIG VVGLWYGHQR LSKKRVLEHR  60
TPLMVAAKYG SVDVVKLILA LPEVDVNFSC GSDKCTALHC AVSGGSINAI DVVKLLLLAG  120
ADPSISDANG HRPADVISAS PNFPYSKSAL EELLKNNGSV RQLDLQVSTN GSRSSSTSIS  180
WSSVEGSLSS TSGSVLSSIN CKPIDLHVSS AKKEYPVDPS LPDIKNSIYT TDEFRMFSFK  240
VQPCSRAYSH DWTECPFVHP GENARRRDPR RFNYSCMPCP DHRKGACRRG DFCEYSHGIF  300
ECWLHPSQYR TRLCKDGTSC TRRVCFFAHT SEELRPTYAS TDVALPLPQA SAMDFTAALN  360
LLSGSLSAVS PMSHFPYTPP MSPSGNDIHL PMAWPQQDTS NMQILGNNLQ GSRLRTSLSG  420
RYVSPEEFNR FQDIELQKLH LRNEQSCVPQ PHHRISSTNI SARLKQLNPS NQDRLLSSQN  480
ADQMDAASMF SPSYKSAVIN KLQQQSMLSP IKTSGFSLKN IDHPLLQVSF DSSSPRTMSP  540
RINEPISLAS SQLQLQLGSL SSRELGSDLP YDLGYDGVSL WPKQKPADEN VDWSIQADEV  600
GQLQKSCSNV RCGEEPDVSW VHSMLKESSS ETEETGLVSV SGNGEGSTPN PPNESNDLVG  660
LRAWLEGMQL DQMVA
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513504.10.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLB9RID50.0B9RID5_RICCO; Transcription factor, putative
STRINGXP_002513504.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1776055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain