PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30169.m006445 | ||||||||
Common Name | LOC8274450, RCOM_1578050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-YA | ||||||||
Protein Properties | Length: 350aa MW: 38143.5 Da PI: 7.5713 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.2 | 1e-31 | 174 | 230 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy +Il+RRq+Rak+e+ekkl +k rkpylheSRh+hA+rR+RgsgGrF 30169.m006445 174 QEPVYVNAKQYPGILRRRQARAKAEHEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 230 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-34 | 172 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.332 | 173 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.3E-28 | 175 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-23 | 176 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 178 | 198 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.0E-23 | 207 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MQSKSESANQ LESRDQHSLP PYAVHSEPWW RTIGYSTVSR ALAGGNASNL SSSEGPNGSL 60 SNDDQSMSNG RLNEEDDDAS KESQATASSR SVLNGGQENR NLQHVAPSMT AMRDEGLTQP 120 TQLELVGHSI ACASNPYQDP YYGGMMAPYG HQPLGYPFLG GHQVRMALPN EIAQEPVYVN 180 AKQYPGILRR RQARAKAEHE KKLIKVRKPY LHESRHQHAM RRARGSGGRF AKKTGGDDSK 240 NNKEGTANDT GAIPSSQSGS SSGSEQLPSD SAQTWNLPHG DQELRSARVY DTSEARNHIN 300 GGSHYQNHSG LQTLKHHPHS GEKGEDEDCS GQQRGSISSN QVSQRPLAIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-18 | 174 | 230 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30169.m006445 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571336.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_015571337.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_015571338.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 8e-82 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | B9RID0 | 0.0 | B9RID0_RICCO; Nuclear transcription factor Y subunit A-1, putative | ||||
STRING | XP_002513499.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 1e-80 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | 30169.m006445 |
Entrez Gene | 8274450 |
Publications ? help Back to Top | |||
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