PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006343
Common NameRCOM_1575740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 299aa    MW: 34222.4 Da    PI: 9.1784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006343genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.8e-50211492128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtdeel+ +yL++kv++k+l++ e ik+vdiyk++PwdLpk  + ++ke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+  
  30169.m006343  21 LPGFRFHPTDEELIGFYLRRKVDKKPLRI-ELIKQVDIYKYDPWDLPKPSSVGDKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSNgg 115
                    59***************************.89***************8777899***************************************965 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  30169.m006343 116 eGRDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 149
                    44455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-5516180IPR003441NAC domain
PROSITE profilePS5100552.94120180IPR003441NAC domain
PfamPF023654.5E-2522149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNVNKKSCSG SMDYHDDEVA LPGFRFHPTD EELIGFYLRR KVDKKPLRIE LIKQVDIYKY  60
DPWDLPKPSS VGDKEGYFFC KRGRKYRNSI RPNRVTGSGF WKATGIDKPV YSNGGEGRDC  120
IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP TNDSNTNSPA NAKTSAPEAE VWTLCRIFKR  180
NVSHRKYTAD WRELSTKHQP AIDTSSKTCS VDSNSRENYL SFGDPAIQYS EKKPVFNHVN  240
ERKQFYHADQ LSSIVQPQSM VSSSIISSNI SSPYGNEFFS GDWDELRSIV EFTFDPTPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-462218619171NO APICAL MERISTEM PROTEIN
1ut4_B1e-462218619171NO APICAL MERISTEM PROTEIN
1ut7_A1e-462218619171NO APICAL MERISTEM PROTEIN
1ut7_B1e-462218619171NO APICAL MERISTEM PROTEIN
3swm_A1e-462218622174NAC domain-containing protein 19
3swm_B1e-462218622174NAC domain-containing protein 19
3swm_C1e-462218622174NAC domain-containing protein 19
3swm_D1e-462218622174NAC domain-containing protein 19
3swp_A1e-462218622174NAC domain-containing protein 19
3swp_B1e-462218622174NAC domain-containing protein 19
3swp_C1e-462218622174NAC domain-containing protein 19
3swp_D1e-462218622174NAC domain-containing protein 19
4dul_A1e-462218619171NAC domain-containing protein 19
4dul_B1e-462218619171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006343
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052310.0KR605231.1 Manihot esculenta NAC transcription factors 93 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513398.30.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLB9RI290.0B9RI29_RICCO; NAC domain-containing protein, putative
STRINGXP_002513398.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-92NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]