PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014428
Common NameRCOM_1504530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 422aa    MW: 46789.3 Da    PI: 9.8279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014428genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09182229455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  30147.m014428 182 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 229
                    8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-17176244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-9176233No hitNo description
Gene3DG3DSA:4.10.280.103.2E-16178243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.739178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAAFSYQQHH PFHLDSVFLP SASAIKNLSG FLEKGNSIIN TNYFSQFYPP LETTPDLDVR  60
FHETSPPIDH SSMVAALSDN EPSSVTKKQS TDSSTVVDKF ESGEQVTQKL APMDKKRKSS  120
FNSAQSKDAR DGRGKKQKKC NNEVKEDKKP KAEKKDQKKV PDQEPPTGYI HVRARRGQAT  180
DSHSLAERVR REKISERMKI LQRLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA  240
SVNPLFYDFG MDFDALMVRP EGLNSLASSL PLMQQCPPTT AFADSTATAT TTTAATSTFV  300
TANNYSLMDA SAPFLLPGQR PSDFIQMNKD KSFLIHLGSP TTCALLSTKI NTIAALQKHL  360
LAMGCQSQTK PEREKKQKNI ENQLKRSFFG FNISSNEEGF LKSIGILKMN KRGSVGCSKI  420
SG
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918263e-84FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578685.10.0transcription factor bHLH137
TrEMBLB9RA850.0B9RA85_RICCO; DNA binding protein, putative
STRINGXP_002511110.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-60bHLH family protein