PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014152
Common NameLOC8258318, RCOM_1497810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 385aa    MW: 40965.2 Da    PI: 7.1719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014152genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1202.8e-3787206384
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................. 65 
                     +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt                                 
  30147.m014152  87 SAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsingtlkipttsparpdgdetlprk 182
                    5799***********************************************************777777777777777765555555555444444 PP

            TCP  66 ..ssssasec...eaesssssasn 84 
                      + +s+se+   +++++++++++
  30147.m014152 183 rrKRPSNSEFidvNEHRQHQQQQQ 206
                    443333333332211111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.51292146IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-3192217IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDSNHHHHHR HHTIEEIDQE QSISPNFSSS ETSMVEPPDP EPTLLLKEEE LTDTDAQDNN  60
NSLPITLSQV PLSLSKATNN NRSLASSAKR PSKDRHTKVE GRGRRIRMPA TCAARIFQLT  120
RELGHKSDGE TIRWLLEHAE PAIIEATGTG TVPAIAVSIN GTLKIPTTSP ARPDGDETLP  180
RKRRKRPSNS EFIDVNEHRQ HQQQQQSSLS SGLAPISPTN TTATLQNNNF GSAQGLVPFW  240
PMGTFVLPQS AGLTGGVGVG GSNQQPQLWA IPANATPFFN VAARPISNFV SAMQPGVQLG  300
AGIGFNVSNT IGSSGLSTAS PSSSSSPMGS MSSSTSNSGG GGGGGNTSNS GSAQMLRDFS  360
LEIYDKKELQ FLGQPNSQQT SCSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186PRKRRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510862.10.0transcription factor TCP19
SwissprotQ9LT894e-82TCP19_ARATH; Transcription factor TCP19
TrEMBLB9R9I70.0B9R9I7_RICCO; Uncharacterized protein
STRINGXP_002510862.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-72TCP family protein