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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 30147.m014054 | ||||||||
| Common Name | RCOM_1513320 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family | LBD | ||||||||
| Protein Properties | Length: 164aa MW: 18971.7 Da PI: 9.1503 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 24.7 | 6.5e-08 | 21 | 45 | 3 | 27 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqp 27
a+C ++ rkC+++C+lapyfp +q+
30147.m014054 21 ASCEYQARKCSSGCPLAPYFPPDQE 45
89*******************9985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 1.4E-5 | 21 | 45 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 164 aa Download sequence Send to blast |
MSGLIYQKNA ELILGLRQAY ASCEYQARKC SSGCPLAPYF PPDQEIARNL IIWCRKESRN 60 SWRTSKARTN TFFNIINLPG KYRRKVSCSW ACFICQLHYQ IRQAEKELHS HTTSGYTSGP 120 CQVSLKSWEE IFLLVSKVDG KSWEETLRDR TQCTNKAYCP GRDN |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 30147.m014054 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B9R928 | 1e-119 | B9R928_RICCO; Uncharacterized protein | ||||
| STRING | XP_002511503.1 | 1e-120 | (Ricinus communis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G47870.1 | 1e-06 | LOB domain-containing protein 27 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 30147.m014054 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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