PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30146.m003509
Common NameLOC8273781, RCOM_1489460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 381aa    MW: 41490.1 Da    PI: 6.3939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30146.m003509genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-13119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
    30146.m003509 119 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 163
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.2E-4227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.87112168IPR017930Myb domain
SuperFamilySSF466899.72E-17114169IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-19115167IPR006447Myb domain, plants
SMARTSM007175.5E-10116166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-11116162IPR009057Homeodomain-like
PfamPF002499.6E-11119163IPR001005SANT/Myb domain
CDDcd001674.37E-9119164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RSSTCSSAAG SGSASSSASS IAGVRLFGVR LTDGSIIKKS  60
ASMGNLSAHY HSSAAASPNP DSPLSDHVRD SVQDGYLSDD PAHASCSTNR RGERKKGVPW  120
TEEEHRLFLI GLQKLGKGDW RGIARNYVVS RTPTQVASHA QKYFIRQTNA TRRKRRSSLF  180
DMVPDMATEP QSVPEEHELP SGQLGDTDNA DALPSLNLSF KPECEPMETA SEEPAEEPEE  240
MLTGSSELKQ TEHRLSEFAP AVPQLSEFTP FISGFYPAYM PIPYPFWSTN TAIPEEANTV  300
ETSNHQVLKP VPIFPKEPVN VDELVGMSHL SIGEMERDHR ELSRLSLKLI GEPSRQSAFH  360
ANASVSGSDL SQGKGSPIQA V
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30146.m003509
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515966.10.0transcription factor MYBS3 isoform X2
SwissprotQ7XC571e-94MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLB9RQE70.0B9RQE7_RICCO; DNA binding protein, putative
STRINGXP_002515966.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-94MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]