PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007174
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 371aa    MW: 41150.4 Da    PI: 10.0126
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007174genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-1546129186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  v  L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + ++         s++p++ +l+
  30131.m007174  46 EWSEGAVSSLLEAYESKWILRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESATTDA------SSWPLYPRLD 129
                    5*************************************854444555566679**************9998886......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.7E-1944129No hitNo description
SuperFamilySSF1014475.23E-6207216No hitNo description
SuperFamilySSF1014475.23E-6281304No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDKETNQESP SLPSNSNKEE HPRKPLGSSG GGAGFSGGGD RLKRDEWSEG AVSSLLEAYE  60
SKWILRNRAK LKGHDWEDVA RYVSSRANCT KSPKTQTQCK NKIESMKKRY RSESATTDAS  120
SWPLYPRLDL LLRGNAAAAA ATAAAAVQPL NQPQQPTPSN HPPLLLLEPC HVHVPQPQPX  180
XXXXXXXXXX XXXXXXXXXX XXXXPPPPPP PPPPPPPPAA AHPVIIMTAQ NSYGSNGVDK  240
GAKEDGKLSD HVSDKNAMDT DSSTPALYSD KEKLRAKKMK MKMDKKKRRR REEWEIADSI  300
RWLAEVVVRS EQARMETMRE VEKMRMEAEA KRGEMDLKRT EIIANTQLEI AKLFAGVGGK  360
GVDSSLRIGR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276287KKMKMKMDKKKR
2284289KKKRRR
3284290KKKRRRR
4285290KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570691.10.0trihelix transcription factor ASIL1
TrEMBLB9RG860.0B9RG86_RICCO; Uncharacterized protein
STRINGXP_002513038.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.19e-57sequence-specific DNA binding transcription factors