PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m007106 | ||||||||
Common Name | RCOM_1449200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | DBB | ||||||||
Protein Properties | Length: 226aa MW: 25035.9 Da PI: 7.0003 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.5e-08 | 3 | 45 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 kC+ +++ e++ fC ++ lCe C + H+ H++ 30131.m007106 3 IKCDVCDKSEASVFCSADEAALCEACDRHVHHAnklaskhHRF 45 58******99********************6445888886766 PP | |||||||
2 | zf-B_box | 27.3 | 7.3e-09 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +Hk Ht 30131.m007106 54 QSPLCDICQERRAFLFCQEDRAILCRECDIPIHKAneHT 92 6789*****************************888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.035 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-6 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.89E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.267 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 54 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.75E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MKIKCDVCDK SEASVFCSAD EAALCEACDR HVHHANKLAS KHHRFSLLRT SSKQSPLCDI 60 CQERRAFLFC QEDRAILCRE CDIPIHKANE HTKKHNRFLL TGIKLSNSSS LYPTSSSSNS 120 SCDSKKITTS NKKSLQQQPY VNNINTPSFS NEMLSSSSVE RASSPSSTAA YNNFDDNVSI 180 STSSISEYLE ALPGWRVDDF LDPAIATDGF CKGVNIESTH EHPFCG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m007106 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015570812.1 | 1e-153 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 8e-68 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | B9RHB2 | 1e-165 | B9RHB2_RICCO; Salt-tolerance protein, putative | ||||
STRING | XP_002512971.1 | 1e-166 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-63 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | 30131.m007106 |