PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m006850 | ||||||||
Common Name | LOC8260765, RCOM_1441350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 172aa MW: 18921.1 Da PI: 5.6522 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 22.6 | 2.1e-07 | 49 | 75 | 33 | 59 |
--EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 33 pvkkkversaedpkvveitYegeHnhe 59 +vk +v+rs ed+++++ tYegeHnh+ 30131.m006850 49 SVKEEVQRSIEDQTILVATYEGEHNHP 75 6999**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-6 | 47 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-5 | 48 | 77 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.821 | 50 | 77 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDYSSSWVDT SLDLNLNPRR VKDDVPIQER LAMANDVQSN FMELGRNISV KEEVQRSIED 60 QTILVATYEG EHNHPHPSQM EATSGASRSL TLGSVPCSAS LGSSGPTITL DLTKSKSSND 120 ARSSKPRMET PEVRQFLVEQ MASSLTKDPN FTAALAAAIS GKMLQQNHKD KW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m006850 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025012062.1 | 1e-123 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 5e-39 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | B9RGL0 | 1e-124 | B9RGL0_RICCO; Uncharacterized protein | ||||
STRING | XP_002512719.1 | 1e-125 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-41 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | 30131.m006850 |
Entrez Gene | 8260765 |