PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008984
Common NameLOC8274966, RCOM_1436810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32688.7 Da    PI: 9.0804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008984genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.9e-181151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s r+ tf kR++g++KK  ELS+LC++e++vii+s+ 
  30128.m008984 11 ITNDSARKATFKKRKKGLIKKVDELSTLCGIEACVIIYSPY 51
                   89*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.717149IPR002100Transcription factor, MADS-box
CDDcd002661.74E-22285No hitNo description
SuperFamilySSF554559.68E-26294IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLIK KVDELSTLCG IEACVIIYSP YDTQPEVWPS  60
PTGVQHVLSQ FRNMPEMEQS KKMVNQESFL KQRLGKANDQ LKKQRKENRE KEVTRVMFQS  120
LIGRTLTNLN MIDLNDLSWI IDQHLKDIRK KAETNNKEIT SQMIAVAPPP PPPPPPPPPP  180
QPQPQPQPQL PLPPPPQLPS PPPPQLPSPP PFTPETSIFA GPIMEVAPFQ EEAERQTFEA  240
NMEAMQRHQW IMEAMSPHEN FGFLGDDMML PFGDTNHNSL WSSSFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512584.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLB9RFR50.0B9RFR5_RICCO; Mads box protein, putative
STRINGXP_002512584.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]