PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30115.m001183
Common NameRCOM_1407360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 529aa    MW: 59068.5 Da    PI: 6.0783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30115.m001183genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18127217199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k l++s+v++  ++ lp +f+++h   ++e++ + lede g+++ +k+   +++ +  l++GW++F+ a++L egD++vF+l+g  +f  +v +
  30115.m001183 127 FVKSLVRSHVGSCFWMGLPGPFCRAHL--PREDTVVFLEDECGKVMGMKY--IGYKTG--LSAGWRQFAVAHQLLEGDVLVFQLIGPCKF--KVYI 214
                    89************************5..456789***************..666655..9*************************8888..8888 PP

                    E-S CS
             B3  97 frk 99 
                    +r+
  30115.m001183 215 IRA 217
                    876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-20119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-24120218IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-26125216No hitNo description
PROSITE profilePS5086312.125127218IPR003340B3 DNA binding domain
SMARTSM010191.3E-20127218IPR003340B3 DNA binding domain
PfamPF023621.0E-15127217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEETVKMEAE EGNLNRTTSF EEENLKSVRE EDVTLAQLSF SSPSSPPRPL ASFSAGMERS  60
EKRVKVKRRY SDSKTKHAIT GHAGKCICCG KSKPAIDRLT NPGEVKSAAM IRAEEVQSNL  120
ESTYPSFVKS LVRSHVGSCF WMGLPGPFCR AHLPREDTVV FLEDECGKVM GMKYIGYKTG  180
LSAGWRQFAV AHQLLEGDVL VFQLIGPCKF KVYIIRANDL AEVDGALGLL TLDPQIKQND  240
AGKLVDVFVL QNFLSCMSLL TDPYCIWMPK IETIKDNAEM ATVACTSAKR KRPRSLPLAV  300
VQKNNKKSSR SRLSVPKTGQ LAEQSENDSE EVGSEVLEGF KLSLPAVQFE DVKSFENFNI  360
LVDGLVLDSE LSEDIRRKYY KLCCSQNAFL HESLIKGINF KLIAGIISET VNIADAIRAS  420
NLTTSSDEFD TWDKTLNASE QFGMKVGFLR ARLSQLVSLA FDSEGATKTR RYIEARTERV  480
NTEDEIRNLE AKLEELKAAN EKFGADIESL KLKAESYEIK FQEEVLAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMap30115.m001183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577525.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLB9SC430.0B9SC43_RICCO; Uncharacterized protein
STRINGXP_002523562.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-38B3 family protein