PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30099.m001671 | ||||||||
Common Name | RCOM_1382320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25589.5 Da PI: 8.6033 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.3 | 7.4e-22 | 35 | 82 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ k+ qvtfskRr+g++KKA+EL++LC++e+a+++fs+ +k + + 30099.m001671 35 KISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82 799**************************************9997766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.338 | 26 | 86 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-31 | 26 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.15E-33 | 27 | 95 | No hit | No description |
SuperFamily | SSF55455 | 1.02E-26 | 27 | 112 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 28 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-23 | 35 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 48 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 63 | 84 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MLAPRNTKVI DYFFLSFNNG EERVYLGRQK IAIEKISKKT HLQVTFSKRR AGLFKKASEL 60 CTLCGVEIAI LVFSPANKAF SFGHPEVESV LDRFLARHPL PTSSSAHQLI EAHRNANVCE 120 LNMQLTHTLN QMEDEKKKGE LLDQIRKSSQ NMCWWEAPID ELGMHELEQL RFALEELKKN 180 VTKQISKILI NSGSSLPFSS GNVIGHISDY ESKPNVAPCI PCVNKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-15 | 26 | 112 | 1 | 87 | MEF2C |
5f28_B | 4e-15 | 26 | 112 | 1 | 87 | MEF2C |
5f28_C | 4e-15 | 26 | 112 | 1 | 87 | MEF2C |
5f28_D | 4e-15 | 26 | 112 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30099.m001671 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002522084.2 | 1e-163 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 2e-58 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | B9S7W8 | 1e-167 | B9S7W8_RICCO; Mads box protein, putative | ||||
STRING | XP_002522084.1 | 1e-168 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-61 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | 30099.m001671 |
Publications ? help Back to Top | |||
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