PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30076.m004693 | ||||||||
Common Name | LOC8265156, RCOM_1348010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21101.8 Da PI: 9.4425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.7e-05 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F ++ L H++ H 30076.m004693 53 FECHFCGRAFANSQALGGHQNAH 75 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 51 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.13E-6 | 51 | 80 | No hit | No description |
PROSITE profile | PS50157 | 12.695 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAESSSTPSQ QSHHKPSSAL KLFGFTLIEH EQDVAKSGET TSSNCSSVEI RKFECHFCGR 60 AFANSQALGG HQNAHKRERQ RARRAQYHCD RRLMAAAPVV SSHAMKATPN STICSAGLIS 120 SSDHFAGAKL RPPQPSNGQA RPLLFAPSSA ASRIYVGPPL RLAATSMPSF AEFNPAKLLS 180 DQEVEIDLCL KLTPSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30076.m004693 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002515318.1 | 1e-142 | zinc finger protein GIS3 | ||||
TrEMBL | B9RNH9 | 1e-141 | B9RNH9_RICCO; Uncharacterized protein | ||||
STRING | XP_002515318.1 | 1e-142 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 3e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 30076.m004693 |
Entrez Gene | 8265156 |