PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004487
Common NameLOC8270788, RCOM_1341380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 377aa    MW: 42754.8 Da    PI: 4.6873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004487genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.7e-42221483127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    +G+rFhPtd+elv+++Lk k+ g+++     i++++++++ePwd+p+  +++ e++ wyfF+ rd ky +++r+nr+tk+gyWk tgk ++v++k 
  30076.m004487  22 VGYRFHPTDDELVDHFLKLKMLGRDNVK-PPIPQIKVCDFEPWDIPAlvNTNFEDQVWYFFCARDYKYLHSRRSNRTTKAGYWKPTGKPRKVKAKr 116
                    7***********************9555.77***************6335555899*************************************986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++e++g+k++Lvfy +++pk+++t+W+mhey+
  30076.m004487 117 TKEEIGTKRSLVFYIKDHPKPRRTKWIMHEYE 148
                    7788***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4516167IPR003441NAC domain
PROSITE profilePS5100542.82220169IPR003441NAC domain
PfamPF023652.1E-2522148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNHNFPSAMT SPAPPDQSIP LVGYRFHPTD DELVDHFLKL KMLGRDNVKP PIPQIKVCDF  60
EPWDIPALVN TNFEDQVWYF FCARDYKYLH SRRSNRTTKA GYWKPTGKPR KVKAKRTKEE  120
IGTKRSLVFY IKDHPKPRRT KWIMHEYECI PNSTLATQGN FLLYKLKSRP DANINQGEPS  180
QTTLASDLEN QALNEMVVNF SSDVYEQGIP SAVDLDCNNL SKTMSTYEKG ERNRLVEVTT  240
DSAGDEVESR YCLGYELEAQ NPNEATPASS CKTMDFDLQN PDQKTDISEA SEEGEWSPAL  300
TPSGKSDMSA SSIAADLENN AAKGTIFEVD PLETFYNGLE AFLELEEDFN AALLPRTSTN  360
ESLSYTRFDM PLFLQGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-272314818139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004487
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515116.10.0NAC domain-containing protein 96
TrEMBLB9RMX70.0B9RMX7_RICCO; Uncharacterized protein
STRINGXP_002515116.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.23e-45NAC transcription factor-like 9