PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004456
Common NameLOC8285504, RCOM_1339970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 400aa    MW: 45859.6 Da    PI: 5.1745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004456genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-14212263155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  30076.m004456 212 QRMTHIAVERNRRRQMNDHLNSLRSLMPPS---YVQRGDQASIIGGAIDFVKELE 263
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.34E-12210267No hitNo description
SuperFamilySSF474598.37E-17211279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.745211262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13212276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-11217268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MERVQGPIDP CFLGERLDVE GLQREFANTG SLRFQEEEEE EEEEEETQLL MPSLEDKMPF  60
LQMLQSVEYP PFFPIKEPNF QTLLKLQHLK KQQPWDMTTY ITETETRHIQ AAALEHESCV  120
THDIPDLHSP VKSESQDLRN PHSNSYLEEV SREANNQTVR VNSDSSSFPW TIQQTMLSDT  180
HFSKSSPLLV PRERRKRKRT RPTKNKEEVE SQRMTHIAVE RNRRRQMNDH LNSLRSLMPP  240
SYVQRGDQAS IIGGAIDFVK ELEQLLQSLE AQRRTRKPEE AEAGIGISSN GLFTLQSDCN  300
GNCEEESKVK RISEVGEIEV TAVHNHVNLK IQCHRKPGLL LRAIFALEEL RLSVLHLNIT  360
SSETTVLYSF NLKIEEDCKL GSADEVAATV NQIFSIINGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RRKRKR
2212223RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515085.10.0transcription factor bHLH67
TrEMBLB9RNL40.0B9RNL4_RICCO; DNA binding protein, putative
STRINGXP_002515085.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-70bHLH family protein