PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30073.m002274 | ||||||||
Common Name | LOC8280485, RCOM_1326830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29448.7 Da PI: 4.4826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.6 | 2.3e-27 | 7 | 123 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 G+ +Ptd+el L k g + + ++ +++y++ePw+Lp + vk++++ew ++r+ g+r nr t++gyWk tg+++++++ ++e 30073.m002274 7 GILHRPTDKELAYILLWKTFLGYDDPR---VPVLNLYDYEPWELPqHGVKTDDREWCIICPRQ-----GERGNRLTEEGYWKVTGNEHKIKD-GQE 93 66779*******999999999999666...8999***********66899999********85.....6799*******************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+k++L+fy+gr+p+g+ t W mh+y++ 30073.m002274 94 EIGTKRILIFYRGRTPNGKLTGWKMHQYSA 123 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.064 | 4 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-33 | 7 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-11 | 9 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTPPDGGILH RPTDKELAYI LLWKTFLGYD DPRVPVLNLY DYEPWELPQH GVKTDDREWC 60 IICPRQGERG NRLTEEGYWK VTGNEHKIKD GQEEIGTKRI LIFYRGRTPN GKLTGWKMHQ 120 YSAALNMFSP NQQGIFVLCK IIDKSNGSEG NMPNYYEDEL SSSMTVSGAY QIPTYSSFEY 180 GGISQSMNSE NKARDAATLQ QVDAELEPYL ETSNGWGEQN PSFHSASEWE MQAEQRLYNV 240 FIGDFQFLSE PETDQW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-19 | 3 | 149 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-19 | 3 | 149 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-19 | 3 | 149 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-19 | 3 | 149 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 3 | 149 | 21 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-19 | 3 | 149 | 18 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-19 | 3 | 149 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30073.m002274 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520050.1 | 0.0 | NAC domain-containing protein 62 | ||||
Refseq | XP_025013258.1 | 0.0 | NAC domain-containing protein 62 | ||||
TrEMBL | B9S231 | 0.0 | B9S231_RICCO; Transcription factor, putative | ||||
STRING | XP_002520050.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27826 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 3e-30 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | 30073.m002274 |
Entrez Gene | 8280485 |