PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30068.m002670 | ||||||||
Common Name | LOC8278531, RCOM_1316970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 230aa MW: 25088.8 Da PI: 10.5814 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 252.4 | 2.9e-77 | 37 | 230 | 105 | 301 |
GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesad.erskaekksidlvl 198 t+si+s +q++++ +++ + a+ e a+++++ +k k+r+++ ++k +++ +k+ k ++++k++kk++++ +++k+ek++i++ + 30068.m002670 37 TNSIHSQG----SQIDEPILPVPPIC-SIAPAAEPAKNNNSGAKPAKARKQKPSAKGSNQIpSKTFKLKQPRKTSKKKGQSmPEAKREKRNINVDI 127 44444322....46666666644433.333333333333333343443333333333333323333445556666666666689************ PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294 +++D s++P P CsCtG++r+CYkWG+GGWqS+CCtt+iS yPLP+s+ r+gaR+agrKmS+ga+ klL kLaaeGydls+pvDLk+hWA+HGt 30068.m002670 128 GRMNFDLSGVPSPFCSCTGMPRVCYKWGAGGWQSSCCTTNISEYPLPMSAARPGARMAGRKMSNGAYLKLLLKLAAEGYDLSHPVDLKEHWARHGT 223 ************************************************************************************************ PP GAGA_bind 295 nkfvtir 301 nkfvti+ 30068.m002670 224 NKFVTIK 230 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.5E-80 | 16 | 230 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.7E-68 | 70 | 230 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGTYSNRNHL IPEASTGASL PHFAWFYPGS FYSAPKTNSI HSQGSQIDEP ILPVPPICSI 60 APAAEPAKNN NSGAKPAKAR KQKPSAKGSN QIPSKTFKLK QPRKTSKKKG QSMPEAKREK 120 RNINVDIGRM NFDLSGVPSP FCSCTGMPRV CYKWGAGGWQ SSCCTTNISE YPLPMSAARP 180 GARMAGRKMS NGAYLKLLLK LAAEGYDLSH PVDLKEHWAR HGTNKFVTIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30068.m002670 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519003.1 | 1e-172 | protein BASIC PENTACYSTEINE7 | ||||
Refseq | XP_015574533.1 | 1e-172 | protein BASIC PENTACYSTEINE7 | ||||
Refseq | XP_015574534.1 | 1e-172 | protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 2e-69 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | B9RZ34 | 1e-170 | B9RZ34_RICCO; Uncharacterized protein | ||||
STRING | XP_002519003.1 | 1e-171 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16430 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 4e-67 | basic pentacysteine 7 |
Link Out ? help Back to Top | |
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Phytozome | 30068.m002670 |
Entrez Gene | 8278531 |