PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002643
Common NameLOC8278504, RCOM_1315300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 810aa    MW: 90032.2 Da    PI: 5.4355
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002643genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2087142156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  30068.m002643  87 KKRYHRHTARQIQEMESLFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 142
                    688899***********************************************998 PP
2START144.51e-452865112206
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                    +a++ ++elvk+   +ep+W +    e+g+evl  +e ++                ++ea r+s+vv+m++ +lv  +ld + +W e ++     a
  30068.m002643 286 FALSSMDELVKMCHTTEPLWIRNN--EIGKEVLNFEEHERRfrwplnlkqqnsneLRSEATRDSAVVIMNSITLVDAFLDAN-KWMELFPsivaMA 378
                    68899*****************99..9999999988777769****************************************.******9999899 PP

                    EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
          START  80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     t++ ++sg     g l+lm aelq+lsplvp R+ +f+Ry++q  ++g+w+ivd  +ds  +   ++s+   +++pSg++i++++ng+s+vtwve
  30068.m002643 379 RTVQILTSGvsgpsGSLHLMHAELQVLSPLVPtREAYFLRYCQQnVEEGTWAIVDFPIDSFHEDI-QASFPLYRRRPSGCVIQDMPNGYSRVTWVE 473
                    9*******************************************99*************999987.66666666********************** PP

                    -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    h++ +++ +h+++ ++v sg+a+ga +w+  lqrqce+
  30068.m002643 474 HAETEEKPVHQIFSHFVYSGMAFGAHRWLGVLQRQCER 511
                    ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1973145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2181149IPR009057Homeodomain-like
PROSITE profilePS5007116.90884144IPR001356Homeobox domain
SMARTSM003891.4E-1885148IPR001356Homeobox domain
PfamPF000468.9E-1887142IPR001356Homeobox domain
CDDcd000866.99E-1887145No hitNo description
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PROSITE profilePS5084842.564276514IPR002913START domain
SuperFamilySSF559617.42E-28277513No hitNo description
CDDcd088751.62E-113280510No hitNo description
SMARTSM002341.2E-28285511IPR002913START domain
PfamPF018528.1E-38286511IPR002913START domain
SuperFamilySSF559611.65E-17554707No hitNo description
SuperFamilySSF559611.65E-17738777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MYGDCQVMSN IGGNVVSTDT LFSSAMGNPN FNFMPNMSFH SFPPIIPKEE NGLMMRGKDE  60
MDSGSGSEQL EEKSGNEQES SEQPPKKKRY HRHTARQIQE MESLFKECPH PDDKQRMKLS  120
QDLGLKPRQV KFWFQNRRTQ MKAQQDRADN IILRAENETL KSDNYRLQAE LRNLICPSCG  180
GPAMLGGISF EELRLENARL RDELERVCCV ASRYGGRPIQ AIGPAPPFIP PSLELDMSIY  240
SKLFPDSLGT CNEMMPMSMP MLPDTSCLTE AGLVLMEEEK ALAMEFALSS MDELVKMCHT  300
TEPLWIRNNE IGKEVLNFEE HERRFRWPLN LKQQNSNELR SEATRDSAVV IMNSITLVDA  360
FLDANKWMEL FPSIVAMART VQILTSGVSG PSGSLHLMHA ELQVLSPLVP TREAYFLRYC  420
QQNVEEGTWA IVDFPIDSFH EDIQASFPLY RRRPSGCVIQ DMPNGYSRVT WVEHAETEEK  480
PVHQIFSHFV YSGMAFGAHR WLGVLQRQCE RVASLMARNI SDLGVIPSPE ARKNLMRLAQ  540
RMIRTFCMNI STCSGQSWTA LSDSSDDTVR ITTRKITEPG QPNGVILSAV STTWLPYPHY  600
QVFDILRDER RRSQLDVLSN GNALHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ  660
ESCTDQSGSL IVYTTVNVDS IQLAMSGEDP SCIPLLPLGF VIVPVESITS TSKDTGGNEG  720
NSIKSSEENG NTGHGCTSGC LLTIGLQVLA STIPSAKLNL STVNAINNHL RSTVHQITAA  780
LATTATTTTF PENANAVIGS CSEPTAASEE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4973871e-35AY497387.1 Populus balsamifera subsp. trichocarpa microsatellite ORPM_030 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518976.10.0homeobox-leucine zipper protein HDG5
RefseqXP_015574519.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLB9RZ070.0B9RZ07_RICCO; Homeobox protein, putative
STRINGXP_002518976.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]