PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29969.m000262 | ||||||||
Common Name | RCOM_1151090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26451.6 Da PI: 4.5317 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.8e-10 | 129 | 220 | 1 | 82 |
EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 f+k+l+ +d ++ +rl++++ ++ + +++++++++t++d++g+++ + ++ + +++++vlt+GW+ F + ++L Dfv++ 29969.m000262 129 FEKQLIANDIEENpSRLTMSNADVAGClvplldldkHEDPKKGIEVTVYDREGNEFIMVFK-TWSPRTCVLTRGWNTFLQKHKLLkHQDFVTI 220 6777777777777777777777776667777777664566799*****************5.556678**************98658999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-11 | 129 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-10 | 129 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-7 | 146 | 220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.66E-9 | 146 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGTGGDDDEL REIGEAALGL CSMKFEEIDQ KEASVLEKMK TENLGIGNEG INHNPISREQ 60 RRIPHSQQFA HQDKGNLENE QESSQNLPEN QEVTHSEEDI PNLVYNYKPP DIASFPGLNG 120 LIGECSKPFE KQLIANDIEE NPSRLTMSNA DVAGCLVPLL DLDKHEDPKK GIEVTVYDRE 180 GNEFIMVFKT WSPRTCVLTR GWNTFLQKHK LLKHQDFVTI WIFRKLDDGD FAL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29969.m000262 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9SZC6 | 1e-173 | B9SZC6_RICCO; Uncharacterized protein | ||||
STRING | XP_002531345.1 | 1e-174 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 4e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29969.m000262 |