PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29958.m000942
Common NameLOC8286538, RCOM_1140940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 335aa    MW: 37399.1 Da    PI: 9.8503
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29958.m000942genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.73.1e-1818103278
       trihelix   2 WtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                    Wt +e+++Liea+r ++er   r++        ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++  +++++++
  29958.m000942  18 WTVSETMVLIEAKRMDDERRMkRSSdsegrskPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRIaENGDENE 103
                    *************9666665523323334433999*****************************************9833444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9571082IPR017877Myb-like domain
PfamPF138377.2E-131793No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADQGGNSLI RDYRKGNWTV SETMVLIEAK RMDDERRMKR SSDSEGRSKP AELRWKWVED  60
YCWRKGCLRS QNQCNDKWDN LMRDYKKVRD YERRIAENGD ENEALSYWKL EKNERKDKNL  120
PSNMLLQVYE ALVGVVERKG SQKMVTVTTS AGGSASNPNI TYVMERPITS VHPPLPPLLQ  180
HQVSVSVPVL HPRLPPPPPP QVQASPSLSY SQPLPAVDSD TSGHSDSPAK RRRRRRGGGG  240
GGGEASSGGS GSTSQEVGSA ISKSASIIAE AIQACEERKE RRHRDLLSLH ERKLKVEESK  300
TEINRQCISG LVDAINNLAN SIFALASHKN QSTPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234KRRRRR
2229235KRRRRRR
3230235RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29958.m000942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515806.10.0trihelix transcription factor GTL1 isoform X2
TrEMBLB9RPY70.0B9RPY7_RICCO; Transcription factor, putative
STRINGXP_002515806.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-61Trihelix family protein