PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29945.m000088 | ||||||||
Common Name | RCOM_1113980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 212aa MW: 24098.4 Da PI: 8.6372 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 2e-18 | 112 | 195 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp +f+++h k ++ +++led +g +++ k+ +++ + l++GW++F+ +++L++gD vvF+l++ ++f 29945.m000088 112 FVKSMVRSHVYSCFWLGLPTQFCKNHLPK--KDLDMILEDDNGSTYDAKY--LGNRTG--LSGGWRGFALDHKLDDGDAVVFELVEPDKF 195 89*********************888533..5679***************..777655..***********************9987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-21 | 104 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-24 | 106 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.93E-25 | 110 | 196 | No hit | No description |
SMART | SM01019 | 2.0E-23 | 112 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-17 | 112 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 112 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVADNGNSNT YEEARKLRLK ENKKRFEDLG ISKISKSLSN LTTPEKKTKM DIDLPPLRKS 60 SSWTVAIILW IFFSYVARPL DEVKLASYED RTRALKAAEE FQNSLQSGNP SFVKSMVRSH 120 VYSCFWLGLP TQFCKNHLPK KDLDMILEDD NGSTYDAKYL GNRTGLSGGW RGFALDHKLD 180 DGDAVVFELV EPDKFKHIAS SFKPFDMASS EK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 24 | RKLRLKENKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29945.m000088 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015583363.1 | 1e-122 | putative B3 domain-containing protein At5g58280 | ||||
Refseq | XP_015583364.1 | 1e-122 | putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q5KQI4 | 3e-60 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | B9T523 | 1e-155 | B9T523_RICCO; DNA binding protein, putative | ||||
STRING | XP_002533342.1 | 1e-156 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-60 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29945.m000088 |
Publications ? help Back to Top | |||
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