PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29933.m001454
Common NameRCOM_1096550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 344aa    MW: 39601.8 Da    PI: 4.4306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29933.m001454genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed++l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
    29933.m001454 15 KGTWTPDEDQKLITYINRYGIWNWNEMSKAAGLLRSGKSCRLRWVNYL 62
                     799*****************99**********99************97 PP
2Myb_DNA-binding58.21.9e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eEde+++ ++++lG++ W++Ia++++ gRt++++k++w+++l
    29933.m001454  68 RGNFSSEEDEIILSLHAMLGNR-WSAIAAKFP-GRTDNDIKNHWHTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3431062IPR017930Myb domain
SuperFamilySSF466897.4E-3013109IPR009057Homeodomain-like
SMARTSM007179.3E-121464IPR001005SANT/Myb domain
PfamPF002492.7E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221669IPR009057Homeodomain-like
CDDcd001672.61E-91762No hitNo description
PROSITE profilePS5129428.1363117IPR017930Myb domain
SMARTSM007173.3E-1767115IPR001005SANT/Myb domain
PfamPF002492.2E-1668113IPR001005SANT/Myb domain
CDDcd001673.64E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMRRTLYSKK KPLTKGTWTP DEDQKLITYI NRYGIWNWNE MSKAAGLLRS GKSCRLRWVN  60
YLRPDIKRGN FSSEEDEIIL SLHAMLGNRW SAIAAKFPGR TDNDIKNHWH THLKKRSAAR  120
ETKLQVLQKA EEEFQQKIYP EDCDLLFFKS PNASSSSDSN ISQVSSKLSP SGFSSINSNF  180
DDEADRNNHT LGKNIALYEL NEDFQCIQGQ SFSLEDLDVM QDQMWLNEEC FGCPYVSPSG  240
ASNNSSEYSS LWFDNNHQTI EENMDLSELS EDPFLSSEME VCYTTEDNEA TAYQMWLEGS  300
VYSYTSQIVA DNDLFDYPSI WSDSDQVIGE NIFLSKLSEE RPNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28131165107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29933.m001454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014117.10.0transcription factor MYB30-like
TrEMBLB9SFE30.0B9SFE3_RICCO; Transcription repressor MYB4, putative
STRINGXP_002524712.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-51myb domain protein 15