PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29933.m001453 | ||||||||
Common Name | RCOM_1096540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 41861.1 Da PI: 4.4028 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.8e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ +++ +G W+ ++ g+ R++k+c++rw +yl 29933.m001453 13 KGTWSAEEDQRLIAYINGYGIQKWNEMPKDAGLLRSGKSCRLRWMNYL 60 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 5.9e-19 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eEde+++ ++++lG++ W+tIa +++ gRt++++k++w+++l 29933.m001453 66 RGNFSSEEDEIILSLHAMLGNR-WSTIATKLP-GRTDNDIKNHWHTHL 111 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.155 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.61E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 28.604 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-11 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 68 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MMTLDFDKKP MNKGTWSAEE DQRLIAYING YGIQKWNEMP KDAGLLRSGK SCRLRWMNYL 60 RPSIKRGNFS SEEDEIILSL HAMLGNRWST IATKLPGRTD NDIKNHWHTH LKKRSVVREI 120 KLHVLHKSEE ELQENNYSED GDLSCFTSLN ASNSPESSTI QFSSELSHSA GFSSINSNSG 180 DEADHNDIQA IEQNIALFEL HGDFQCLQGQ SFSLDDLDVM QDPMWLDEEY TGCPYVSPGG 240 ASNNSSEYSS LWTDNNHQII EENVNFSELS KDQFLSSRME LCYTAEDNGA TTYQVRVEGS 300 VYSYTSQIAV ENDLYDYPVI GSNIGQAIEE NILLSKLSEE RPNVLWEKEQ SSPMKGFQKT 360 DQDYGVYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 11 | 114 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29933.m001453 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014118.1 | 0.0 | transcription factor MYB4-like | ||||
TrEMBL | B9SFE2 | 0.0 | B9SFE2_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002524711.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-50 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | 29933.m001453 |