PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29929.m004659 | ||||||||
Common Name | LOC8286805, RCOM_1080560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 141aa MW: 15893.2 Da PI: 9.7112 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56 | 9.1e-18 | 5 | 93 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 e++ + + e+P r+kki+k d+d+++++++a l+s++ elf+ l+ +s a e+kr+t+k i av+r + + dfl+d p 29929.m004659 5 ENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATEQKRKTIKLDHIRIAVKRHQpTSDFLLDSLPS 93 6667777889***************************************************************9976489*****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.0E-18 | 8 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-21 | 14 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-20 | 15 | 92 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MAEEENTVET IRPEFPTGRV KKIMKLDKDI NKVTSDALFL VSRSTELFLR LLAEKSAEVA 60 TEQKRKTIKL DHIRIAVKRH QPTSDFLLDS LPSPTESSDK LAAEKNRSRL IADKPAPPGT 120 RRIDEIFAKS ANEAPIQIND N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29929.m004659 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514923.1 | 6e-97 | negative cofactor 2 complex subunit alpha | ||||
TrEMBL | B9RMF4 | 1e-95 | B9RMF4_RICCO; DNA binding protein, putative | ||||
STRING | XP_002514923.1 | 2e-96 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 4e-51 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | 29929.m004659 |
Entrez Gene | 8286805 |